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Summary:
Rust + PyO3 reimplementation of the full SCENIC+ pipeline — GRN, AUCell, topics, cistarget, peak calling, cell QC, enhancer→gene, eRegulon assembly. Installs and runs where arboreto+pyscenic+pycisTopic no longer do.
Latest version:
0.4.4
Required dependencies:
anndata
|
numpy
|
pandas
|
pyarrow
|
scipy
Optional dependencies:
anndata
|
arboreto
|
ctxcore
|
gensim
|
igraph
|
leidenalg
|
psutil
|
pyscenic
|
scanpy
|
scikit-learn
|
setuptools
|
tomotopy
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