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Author:
Elliot Tower
Summary:
Three-rung benchmark for evaluating whether RNA/DNA foundation models encode genuine secondary structure or composition shortcuts.
Latest version:
0.2.1
Required dependencies:
numpy
|
scikit-learn
|
scipy
|
torch
|
tqdm
Optional dependencies:
biopython
|
einops
|
matplotlib
|
multimolecule
|
rna-fm
|
tensorly
|
transformers
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