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Author:
Tobias Senoner
Summary:
Prepare protein language model (pLM) embeddings for interactive exploration at protspace.app — embed, project, annotate, transfer labels (EAT), and bundle.
Latest version:
4.17.0
Required dependencies:
biocentral-api
|
h5py
|
numpy
|
pacmap
|
pandas
|
protlabel
|
pyarrow
|
requests
|
rich
|
scikit-learn
|
tqdm
|
typer
|
umap-learn
Optional dependencies:
dash
|
dash-bootstrap-components
|
dash-daq
|
dash-iconify
|
dash-molstar
|
einops
|
kaleido
|
plotly
|
protobuf
|
pymmseqs
|
sentencepiece
|
torch
|
transformers
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