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Author:
Yu-Te Lin
Summary:
Processing and integrating data with genome-scale metabolic models (GEM)
Latest version:
0.2.1
Required dependencies:
biodbs
|
cobra
|
dask
|
matplotlib
|
networkx
|
numba
|
numpy
|
openpyxl
|
optlang
|
pandas
|
pingouin
|
pint
|
requests
|
scanpy
|
scikit-learn
|
scikit-posthocs
|
scipy
|
seaborn
|
tomlkit
|
tqdm
|
umap-learn
|
zeep
Optional dependencies:
black
|
flake8
|
ipykernel
|
ipywidgets
|
mkdocs
|
mkdocs-jupyter
|
mkdocs-material
|
mkdocs-redirects
|
mkdocstrings
|
nbconvert
|
pip-tools
|
pymdown-extensions
|
pytest
|
pytest-cov
|
rdkit
|
torch
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