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Author:
OpenFold Team
License:
Apache-2.0
Summary:
OpenFold's Biological Structure Prediction Model based on DeepMind's AlphaFold 3
Latest version:
0.5.0
Required dependencies:
awscli
|
awscrt
|
biotite
|
boto3
|
func-timeout
|
ijson
|
kalign-python
|
lmdb
|
memory-profiler
|
ml-collections
|
numpy
|
pandas
|
pdbeccdutils
|
pytorch-lightning
|
pyyaml
|
rdkit
|
requests
|
scipy
|
torch
|
tqdm
|
typing-extensions
|
wandb
Optional dependencies:
cuequivariance
|
cuequivariance-ops-torch-cu12
|
cuequivariance-torch
|
deepspeed
|
furo
|
mypy
|
mypy-baseline
|
myst-parser
|
pre-commit
|
pytest
|
pytest-benchmark
|
pytest-cov
|
pytest-regressions
|
pytest-vcr
|
pytest-xdist
|
ruff
|
sphinx
|
torch
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