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License:
MIT License Copyright (c) 2025 Vignesh Venkat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to de...
Summary:
Oncoordinate is an interpretable deep learning framework for single-cell and spatial transcriptomic analysis of malignancy that learns malignant and malignancy-associated cell states across epithelial, stromal, and immune lineages while remaining tightly integrated with the scverse ecosystem.
Latest version:
0.1.7
Required dependencies:
anndata
|
click
|
gseapy
|
imageio
|
ipywidgets
|
joblib
|
matplotlib
|
numpy
|
pandas
|
python-igraph
|
pytorch-tabnet
|
scanpy
|
scikit-learn
|
scipy
|
scvi-tools
|
seaborn
|
umap-learn
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