PyPI page
Author:
Victor Medaerts
Summary:
nichenetpy: the python implementation of the NicheNet method. The goal of NicheNet is to study intercellular communication from a computational perspective. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with a prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest.
Latest version:
1.0.4
Required dependencies:
adjusttext
|
anndata
|
matplotlib
|
networkx
|
numpy
|
pandas
|
pycirclize
|
scanpy
|
scikit-learn
|
scikit-network
|
scipy
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