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Summary:
nichenetpy: the python implementation of the NicheNet method. The goal of NicheNet is to study intercellular communication from a computational perspective. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with a prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest.
Latest version:
1.0.1
Required dependencies:
adjusttext
|
anndata
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matplotlib
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networkx
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numpy
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pandas
|
pycirclize
|
scanpy
|
scikit-learn
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scikit-network
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scipy
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