PyPI page
Home page
Author:
Benoit Aigouy
License:
BSD
Summary:
A comprehensive Python pipeline for detecting, quantifying, and analyzing FISH (Fluorescence In Situ Hybridization) spots in 3D microscopy images using deep learning and chromatic aberration correction.
Latest version:
0.0.96
Required dependencies:
affine6p
|
batoolset
|
big-fish
|
czifile
|
deprecated
|
elasticdeform
|
epyseg
|
imagecodecs
|
markdown
|
matplotlib
|
natsort
|
numba
|
numexpr
|
numpy
|
pandas
|
pillow
|
prettytable
|
psutil
|
pyautogui
|
pyperclip
|
pyqt6
|
qtawesome
|
qtpy
|
read-lif
|
requests
|
roifile
|
scikit-image
|
scikit-learn
|
scipy
|
seaborn
|
tifffile
|
tqdm
|
urllib3
Optional dependencies:
python-bioformats
|
python-javabridge
Downloads last day:
2
Downloads last week:
10
Downloads last month:
25