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Author:
None
License:
MIT
Summary:
Deterministic, interpretable genome->phenotype decoder: calls antibiotic/antiviral/antifungal resistance (R/S) from DNA and names the exact genes/mutations driving each call, with its own blind spots + provenance. Spans bacteria, M. tuberculosis, fungi, HIV-1 and SARS-CoV-2. Not a clinical tool.
Latest version:
0.6.4
Required dependencies:
biopython
|
bitsandbytes
|
h5py
|
numpy
|
pandas
|
pyarrow
|
pytest
|
pyyaml
|
requests
|
scikit-learn
|
triton
|
triton-windows
Optional dependencies:
einops
|
pytest-cov
|
ruff
|
torch
|
transformers
|
xgboost
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