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Author:
Christian Dallago
License:
MIT
Summary:
A pipeline for protein embedding generation and visualization
Latest version:
0.2.2
Required dependencies:
appdirs
|
atomicwrites
|
biopython
|
gensim
|
h5py
|
humanize
|
importlib_metadata
|
lock
|
matplotlib
|
numpy
|
pandas
|
plotly
|
python-slugify
|
ruamel.yaml
|
scikit-learn
|
scipy
|
torch
|
tqdm
|
umap-learn
Optional dependencies:
bio-embeddings-allennlp
|
bio-embeddings-bepler
|
bio-embeddings-cpcprot
|
bio-embeddings-deepblast
|
bio-embeddings-plus
|
bio-embeddings-tape-proteins
|
fair-esm
|
flask
|
fsspec
|
jax-unirep
|
jaxlib
|
pymongo
|
sentry-sdk
|
transformers
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