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Author:
Marius Pachitariu and Carsen Stringer
Summary:
Pipeline for calcium imaging
Latest version:
1.0.0.1
Required dependencies:
cellpose
|
importlib-metadata
|
matplotlib
|
natsort
|
numba
|
numpy
|
scanimage-tiff-reader
|
scikit-learn
|
scipy
|
tifffile
|
torch
Optional dependencies:
dcimg
|
h5py
|
mkdocs
|
mkdocs-git-revision-date-localized-plugin
|
mkdocs-material
|
mkdocstrings
|
mkdocstrings-python
|
nd2
|
opencv-python-headless
|
paramiko
|
pynwb
|
pyqt6
|
pyqt6.sip
|
pyqtgraph
|
pytest
|
pytest-qt
|
qtpy
|
rastermap
|
sbxreader
|
sphinx
|
superqt
|
tenacity
|
tqdm
|
xmltodict
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