PyPI page
Author:
Jose Sergio Hleap, Joshua Gould, Bo Li
Summary:
Comprehensive package for analysis of Optical Pooled Screens (OPS) for biological data
Latest version:
1.0.1
Required dependencies:
adjusttext
|
anndata
|
bioio
|
bioio-nd2
|
bioio-ome-tiff
|
bioio-ome-zarr
|
bioio-tifffile
|
centrosome
|
cp-measure
|
dask
|
dask-image
|
decorator
|
filelock
|
flox
|
fsspec
|
igraph
|
itk
|
itk-elastix
|
joblib
|
kneed
|
mahotas
|
matplotlib
|
natsort
|
numcodecs
|
numpy
|
ome-zarr
|
pandas
|
pint
|
psutil
|
pyarrow
|
pydantic
|
scikit-image
|
scikit-learn
|
scipy
|
seaborn
|
shapely
|
stardist
|
statsmodels
|
tensorflow
|
tifffile
|
xarray
|
zarr
Optional dependencies:
cellpose
|
dask-ml
|
ipython
|
miniwdl
|
napari
|
napari-ome-zarr
|
nbsphinx
|
pre-commit
|
pysam
|
pytest
|
pytest-xdist
|
sphinx
|
sphinx-argparse
|
sphinx-copybutton
|
sphinx-rtd-theme
|
ufish
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