PyPI page
Author:
Kynon J.M. Benjamin
License:
GPL-3.0-or-later
Summary:
RFMix-reader is a Python package designed to efficiently read and process output files generated by RFMix, a popular tool for estimating local ancestry in admixed populations. The package employs a lazy loading approach, which minimizes memory consumption by reading only the loci that are accessed by the user, rather than loading the entire dataset into memory at once.
Latest version:
0.7.3
Required dependencies:
cyvcf2
|
dask
|
numpy
|
pandas
|
psutil
|
tqdm
|
xarray
|
zarr
Optional dependencies:
bio2zarr
|
cairosvg
|
cudf-cu12
|
cupy-cuda12x
|
dask-cudf-cu12
|
matplotlib
|
pyarrow
|
seaborn
|
sphinx
|
sphinx-autodoc-typehints
|
sphinx-copybutton
|
sphinx-rtd-theme
|
torch
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