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Author:
None
License:
GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license do...
Summary:
pytximport is Python implementation of `tximport` to transform transcript counts from transcriptome mapping tools into gene count estimations.
Latest version:
0.13.0
Required dependencies:
anndata
|
click
|
click-default-group
|
flox
|
h5py
|
numpy
|
pandas
|
pybiomart
|
tqdm
|
xarray
Optional dependencies:
bandit
|
biocframe
|
certifi
|
coverage
|
decoupler
|
dolomite
|
dolomite-se
|
flit
|
furo
|
ipykernel
|
jupyter-client
|
jupyter-core
|
mypy
|
myst-parser
|
nbsphinx
|
pandas-stubs
|
pandoc
|
pre-commit
|
pyarrow
|
pydeseq2
|
pypath-omnipath
|
pytest
|
ruff
|
sphinx
|
sphinx-autoapi
|
sphinx-autodoc-typehints
|
sphinx-copybutton
|
sphinx-design
|
sphinx-rtd-theme
|
summarizedexperiment
|
types-tqdm
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