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Author:
Brancaccio Lab
Summary:
Microglial imaging analysis: registration, filtering, segmentation, tracing and figures, with a keyed artefact store
Latest version:
0.4.0
Required dependencies:
arch
|
auto-organotypic
|
circadian-workbench
|
diptest
|
numpy
|
pandas
|
pillow
|
reprofig
|
scikit-image
|
scikit-learn
|
scipy
|
tifffile
Optional dependencies:
analysis-kit
|
auto-organotypic
|
circadian-workbench
|
diptest
|
hdbscan
|
hmmlearn
|
imageio-ffmpeg
|
matplotlib
|
pytest
|
scikit-image
|
scikit-learn
|
threadpoolctl
|
torch
|
tslearn
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