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Author:
Nextstrain developers
Summary:
A bioinformatics toolkit for phylogenetic analysis
Latest version:
34.2.1
Required dependencies:
bcbio-gff
|
biopython
|
cvxopt
|
docutils
|
importlib-resources
|
isodate
|
jsonschema
|
networkx
|
numpy
|
packaging
|
pandas
|
phylo-treetime
|
pyfastx
|
python-calamine
|
referencing
|
ruamel-yaml
|
scipy
|
xopen
Optional dependencies:
backports-zstd
|
cram
|
deepdiff
|
flake8
|
freezegun
|
ipdb
|
mypy
|
nextstrain-sphinx-theme
|
pandas-stubs
|
pylint
|
pytest
|
pytest-cov
|
pytest-mock
|
recommonmark
|
sphinx
|
sphinx-argparse
|
sphinx-autobuild
|
sphinx-autodoc-typehints
|
sphinx-markdown-tables
|
sphinx-rtd-theme
|
sphinx-tabs
|
types-jsonschema
|
types-setuptools
|
wheel
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