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Author:
None
Summary:
Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
Latest version:
1.1.2
Required dependencies:
aicspylibczi
|
astropy
|
bactfit
|
cellpose
|
colicoords
|
czifile
|
glob2
|
h5py
|
imagecodecs
|
imageio-ffmpeg
|
mat4py
|
matplotlib
|
napari
|
natsort
|
numpy
|
omnipose
|
opencv-python
|
openpyxl
|
pandas
|
picassosr
|
psutil
|
pyqt5
|
pyqt6
|
pyqtgraph
|
qtpy
|
roifile
|
scikit-image
|
scipy
|
shapely
|
tifffile
|
tiler
|
torch
|
torchvision
|
tqdm
|
xmltodict
Optional dependencies:
napari
|
pyqt5
|
pytest
|
pytest-cov
|
pytest-qt
|
tox
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