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Author:
Colin Combe, Lars Kolbowski, Suresh Hewapathirana
License:
'Apache 2.0
Summary:
mzidentml-reader uses pyteomics (https://pyteomics.readthedocs.io/en/latest/index.html) to parse mzIdentML files (v1.2.0) and extract crosslink information. Results are written to a relational database (PostgreSQL or SQLite) using sqlalchemy.
Latest version:
0.4.17
Required dependencies:
authlib
|
certifi
|
filelock
|
jose
|
lxml
|
numpy
|
obonet
|
orjson
|
pandas
|
passlib
|
psycopg2-binary
|
pymzml
|
pyteomics
|
python-jose
|
python-multipart
|
requests
|
sqlalchemy
|
sqlalchemy-utils
|
urllib3
|
virtualenv
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