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Author:
Vivek Krishnakumar, Adam Taranto
Summary:
Python utility libraries on genome assembly, annotation and comparative genomics
Latest version:
1.6.5
Required dependencies:
biopython
|
boto3
|
crossmap
|
cython
|
deap
|
ete4
|
ftpretty
|
genomepy
|
gffutils
|
goatools
|
graphviz
|
jinja2
|
matplotlib
|
more-itertools
|
natsort
|
networkx
|
numpy
|
ortools
|
palettable
|
pybedtools
|
pyefd
|
pypdf
|
pysam
|
pytesseract
|
rich
|
scikit-image
|
scipy
|
seaborn
|
wand
|
webcolors
Optional dependencies:
black
|
hatch
|
isort
|
mock
|
numpydoc-validation
|
pre-commit
|
pymdown-extensions
|
pytest
|
pytest-benchmark
|
pytest-cov
|
pyyaml
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