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Author:
Yasas Wijesekara
License:
MIT
Summary:
A quick and precise pipeline for detecting phages in sequence assemblies.
Latest version:
1.26.5
Required dependencies:
biopython
|
click
|
h5py
|
jinja2
|
joblib
|
keras
|
kneed
|
matplotlib
|
numba
|
numpy
|
pandas
|
parasail
|
polars
|
psutil
|
pycirclize
|
pydustmasker
|
pyfastx
|
pyrodigal-gv
|
pyyaml
|
requests
|
rich
|
ruptures
|
scikit-learn
|
scipy
|
seaborn
Optional dependencies:
faiss-cpu
|
onnx
|
onnxruntime-gpu
|
pytest
|
pytest-mock
|
sympy
|
taxopy
|
tensorflow
|
tensorflow-metal
|
tf2onnx
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