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Author:
Ben Caiello
License:
Multiple: BSD-3, MIT, academic / non-commercial
Summary:
A GUI for Deepcell and Cellpose segmentation / denoising, for integrating into PalmettoBUG without triggering GPL3 restrictions. Can be launched on its own to do denoising and cell segmentation separate from PalmettoBUG -- but requires / assumes a PalmettoBUG like directory structure.
Latest version:
0.2.4
Required dependencies:
cellpose
|
customtkinter
|
defusedxml
|
napari
|
numpy
|
onnx2torch
|
opencv-python-headless
|
pandas
|
pyside6
|
scikit-image
|
scikit-learn
|
scipy
|
tifffile
|
torch
Optional dependencies:
keras
|
tensorflow
|
tensorflow-addons
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