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Summary:
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
Latest version:
3.1.1
Required dependencies:
bio-grumpy
|
numpy
|
pandas
|
piezo
|
tqdm
|
vcf-subset
Optional dependencies:
black
|
mkdocs
|
mkdocs-gen-files
|
mkdocs-include-markdown-plugin
|
mkdocs-literate-nav
|
mkdocs-material
|
mkdocs-section-index
|
mkdocstrings
|
mkdocstrings-python
|
mypy
|
pandas-stubs
|
recursive-diff
|
requests
|
ruff
|
types-pytz
|
types-tqdm
|
typing-extensions
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