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Author:
Carlos Javier Rodriguez
License:
MIT
Summary:
gMCSpy is a python package for the calculation of Genetic Minimal Cut sets (GMCS). In simple terms, the idea is to take a metabolic model and calculate the genetic vulnerabilities that will render the biomass production impossible. This is done through a Mixed-Integer Linear problem (MILP) formulation and the use of a linear solver.
Latest version:
1.1.5
Required dependencies:
beartype
|
bidict
|
cobra
|
cplex
|
gurobipy
|
joblib
|
scipy
|
tqdm
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