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Author:
GEOtcha Contributors
Summary:
Extract and harmonize RNA-seq metadata from NCBI GEO
Latest version:
0.9.0
Required dependencies:
biopython
|
geoparse
|
platformdirs
|
pydantic
|
pydantic-settings
|
rich
|
tenacity
|
tomli
|
typer
Optional dependencies:
anthropic
|
faiss-cpu
|
gliner
|
httpx
|
mkdocs-material
|
mypy
|
onnxruntime
|
openai
|
pyarrow
|
pymdown-extensions
|
pytest
|
pytest-cov
|
ruff
|
sentence-transformers
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