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Author:
None
License:
GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license doc...
Summary:
dt4dds is a Python package providing a customizable, digital representation of the widely-used DNA data storage workflow involving array synthesis, PCR, Aging, and Sequencing-By-Synthesis. By modelling each part of such user-defined workflows with fully customizable experimental parameters, dt4dds enables data-driven experimental design and rational design of redundancy. dt4dds also includes a pipeline for comprehensively analyzing errors in sequencing data, both from experiments and simulation.
Latest version:
1.1.0
Required dependencies:
biopython
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configargparse
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edlib
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numba
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numpy
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pandas
|
plotly
|
pysam
|
pyyaml
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rapidfuzz
|
rich
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ruamel.yaml
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scipy
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seqfold
|
tqdm
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