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Author:
James C. Kosmopoulos
License:
GPL-3.0-or-later
Summary:
Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) encoded by viral genomes.
Latest version:
1.1.2
Required dependencies:
joblib
|
lightgbm
|
metapyrodigal
|
numba
|
numpy
|
pandas
|
polars-u64-idx
|
psutil
|
ptn-set-transformer
|
pyarrow
|
pyfastatools
|
pyhmmer
|
pyrodigal
|
pyrodigal-gv
|
pyyaml
|
requests
|
scikit-learn
|
snakemake
|
tqdm
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