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Author:
Vivekanandan Ramalingam, Ziga Avsec, Surag Nair, Zahoor Zafrulla
License:
MIT license
Summary:
BPNet: toolkit to learn motif synthax from high-resolution functional genomics data using convolutional neural networks
Latest version:
2.0.0
Required dependencies:
deepdish
|
deeplift
|
deeptools
|
hdf5plugin
|
kundajelab-shap
|
matplotlib
|
pandas
|
plotly
|
py2bit
|
pyfaidx
|
pysam
|
scikit-image
|
scikit-learn
|
scipy
|
tensorflow
|
tensorflow-probability
|
tqdm
Optional dependencies:
pytest
|
pytest-cov
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