PyPI page
Author:
Institute for Protein Design
License:
BSD 3-Clause License
Copyright (c) 2025, Institute for Protein Design, University of Washington
Redistribution and use in source and binary forms, with or without
...
Summary:
A research-oriented data toolkit for training biomolecular deep-learning foundation models
Latest version:
3.0.1
Required dependencies:
biotite
|
cython
|
cytoolz
|
idna
|
jaxtyping
|
numpy
|
pandas
|
pillow
|
py3dmol
|
pyarrow
|
pygments
|
pymol-remote
|
python-dotenv
|
rdkit
|
requests
|
scipy
|
tqdm
|
typer
|
urllib3
|
zstandard
Optional dependencies:
ase
|
ase-db-backends
|
beartype
|
boto3
|
catcif-tools
|
cryptography
|
einops
|
filelock
|
fire
|
huggingface-hub
|
ipykernel
|
lmdb
|
matplotlib
|
myst-parser
|
numba
|
openbabel-wheel
|
posebusters
|
pydata-sphinx-theme
|
pytest
|
pytest-benchmark
|
pytest-cov
|
pytest-dotenv
|
pytest-testmon
|
pytest-xdist
|
requests
|
ruff
|
sphinx
|
sphinx-design
|
sphinx-gallery
|
sphinxcontrib-typer
|
torch
|
tornado
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