PyPI page
Author:
Sacha Psalmon
Summary:
This package implements most of the functions used in the ALIGN pipeline, a modular image analysis workflow adapted for longitudinal, high-troughput microscopy. Developed by the Towbin Lab of the University of Bern.
Latest version:
1.0.0
Required dependencies:
bottleneck
|
csbdeep
|
joblib
|
matplotlib
|
microfilm
|
monai
|
numpy
|
ome-types
|
opencv-contrib-python
|
pandas
|
polars
|
pyarrow
|
pytorch-lightning
|
pytorch-toolbelt
|
pyyaml
|
scikit-image
|
scikit-learn
|
scipy
|
seaborn
|
segmentation-models-pytorch
|
statannotations
|
statsmodels
|
tifffile
|
timm
|
torch
|
torchmetrics
|
whittaker-eilers
|
xgboost
Optional dependencies:
black
|
isort
|
pre-commit
|
pytest
|
pytest-cov
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